PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486628.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 325aa    MW: 37088.2 Da    PI: 6.0914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08150194554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er+RR ++ ++f  L   +P +     kK +K +iL +A+ Y+k L
  XP_004486628.1 150 HIIAERKRRLELTQKFIALSATIPGL-----KKTDKTTILGEAISYVKVL 194
                     899***********************.....9***************977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.205145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14148210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-6150199No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDQSCQNSPL HLEVCDLENM AEQCQNSIDD DDEFLRNIFL QQPEEAKSSS ESENQLQYLQ  60
LQNNNNRSEK RVHNSKMTTP RTFIISFDKS TIIPAATVEV EEEPNKRMER RSGSKLPNSP  120
LSENKKSMDS KSKANQGGKK SRSDSQYLDH IIAERKRRLE LTQKFIALSA TIPGLKKTDK  180
TTILGEAISY VKVLKERVRE LEERNKMKTE STIILNKNDF CSNDTNLEDW CELLPDVKVR  240
VLENEVLIEI HCEKQNGIEI KILDLLENNL HLLVTASSVL PFGNSTLGIT IIAQMGVAYK  300
VTVNDLVKPL RQLLLNIRTN KTDPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486628.10.0PREDICTED: transcription factor bHLH18-like isoform X1
SwissprotQ9T0727e-42BH025_ARATH; Transcription factor bHLH25
TrEMBLG7IMB31e-118G7IMB3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA13G44594.14e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-30bHLH family protein